Automatic testing of single cell models


#1

In an effort to simplify automatic comparison of CA1 PC models, Sára Sáray, a master student with Szabolcs Káli, started to implement unit tests with the sciunit/neurounit package.

Currently you can test models for:

  1. Depolarisation block for somatic current injection based on Bianchi et al. (2012) J Comput Neurosci, 33: 207-225
  2. Oblique dendrite integration for synaptic activation based on Losonczy and Magee (2006) Neuron, 50: 291-307
  3. Firing and AP features for somatic current injection based on sharp electrode data from UCL (Thomson/Mercer)

so far all tests have been implemented for the following models: Bianchi, Golding, Kali/Freund and Migliore

You can download the test suite from https://github.com/BlueBrain/neuronunit
Feel free to add your specific model. We are happy to help.